sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-01142-01151
X
>3CCU-01142-01151
X
>3CCQ-01142-01151
X
>1YJW-01142-01151
X
>3CCJ-01142-01151
X
>3CCL-01142-01151
X
>3CC7-01142-01151
X
>2OTJ-01142-01151
X
>2QA4-01141-01150
X
</seq>
<hsp>
0 1:0.607655677915
0 2:0.272937508442
0 3:0.690796257076
0 4:0.648027430028
0 5:0.42152237649
0 6:0.999995401013
0 7:0.938252135301
0 8:0.901945236219
1 2:0.573961714377
1 3:0.327939785157
1 4:0.751096421496
1 5:0.332790683019
1 6:0.77286346163
1 7:0.523895411547
1 8:0.991507501451
2 3:0.677854439213
2 4:0.540686184652
2 5:0.30606100121
2 6:0.874898351868
2 7:0.79046863589
2 8:0.760132833425
3 4:0.864764527986
3 5:0.406942153987
3 6:0.712242855594
3 7:0.496670202596
3 8:0.933248134077
4 5:0.583095695959
4 6:0.714809417538
4 7:0.771702489432
4 8:0.651893984252
5 6:0.668561176739
5 7:0.546916492408
5 8:0.761102399384
6 7:0.476571264346
6 8:0.667145064044
7 8:0.77774140107
</hsp>