sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1E-Y48-Y21
X
>3F1G-Y48-Y21
X
>2J03-B108-B65
X
>2J01-B108-B65
X
>3KNI-B107-B64
X
>3KNK-B107-B64
X
</seq>
<hsp>
0 1:0.0310269599787
0 2:0.69485119219
0 3:0.695129693053
0 4:0.749868888776
0 5:0.999995533518
1 2:0.69745450659
1 3:0.697328236002
1 4:0.749215409389
1 5:0.998798755524
2 3:0.014794655737
2 4:0.446602108951
2 5:0.604758301155
3 4:0.442624761796
3 5:0.597603637496
4 5:0.399270529245
</hsp>