sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2HOM-A51-A49
X
>3Q3Z-A64-A62
X
>3Q3Z-V64-V62
X
>3U5H-52981-52980
X
>2CKY-B50-B48
X
>1L9A-B71-B70
X
</seq>
<hsp>
0 1:0.361643939314
0 2:0.371276818994
0 3:0.869523041086
0 4:0.627104157777
0 5:0.80559798766
1 2:0.11473144795
1 3:0.9955787057
1 4:0.772235318692
1 5:0.849980396073
2 3:1.0
2 4:0.766102492368
2 5:0.831141904584
3 4:0.472129510513
3 5:0.392262704299
4 5:0.404458967505
</hsp>