sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A1829-A1830
X
>3KNK-A1829-A1830
X
>3OH7-A1830-A1831
X
>3OH5-A1830-A1831
X
>3OHZ-A1830-A1831
X
>3OI1-A1830-A1831
X
>3F1H-A1908-A1909
X
>3F1F-A1908-A1909
X
</seq>
<hsp>
0 1:0.784836776934
0 2:0.767904596674
0 3:0.749596818688
0 4:0.645682901736
0 5:0.642269711063
0 6:0.536482929528
0 7:0.53894641059
1 2:0.614347425284
1 3:0.595439007749
1 4:0.589435396684
1 5:0.577908876968
1 6:0.999034066255
1 7:1.0
2 3:0.0368561323036
2 4:0.300653885948
2 5:0.30146587653
2 6:0.865766141634
2 7:0.864066735148
3 4:0.28916329814
3 5:0.290456370759
3 6:0.857231803351
3 7:0.855655838534
4 5:0.0355403770079
4 6:0.702403684071
4 7:0.692711752592
5 6:0.694517275206
5 7:0.685355612231
6 7:0.035881899445
</hsp>