sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-21228-21229
X
>3OHJ-A1830-A1831
X
>3OHK-A1830-A1831
X
>3U5F-61240-61241
X
>3OXB-A4-A5
X
>3U5D-12064-12065
X
>2J03-A1830-A1831
X
>2J01-A1830-A1831
X
</seq>
<hsp>
0 1:0.804860850033
0 2:0.797657751178
0 3:0.445212914006
0 4:0.517359906127
0 5:0.673915145481
0 6:0.736220462385
0 7:0.738452235908
1 2:0.0296670153573
1 3:0.818529059066
1 4:1.0
1 5:0.451854798076
1 6:0.586884112293
1 7:0.583947888599
2 3:0.811028515604
2 4:0.989868292803
2 5:0.437505753822
2 6:0.56838053093
2 7:0.56647096623
3 4:0.398686121194
3 5:0.590230406045
3 6:0.737365686035
3 7:0.732255423925
4 5:0.693349594489
4 6:0.712546516404
4 7:0.698739063075
5 6:0.422488891469
5 7:0.424770947232
6 7:0.0541389681737
</hsp>