sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A718-A716
X
>3R8T-A1102-A1041
X
>1XMQ-A1330-A1328
X
>2UUB-A1335-A1333
X
>2VQE-A1335-A1333
X
>2UUA-A1335-A1333
X
>2J00-A1335-A1333
X
>2J02-A1335-A1333
X
>3R8O-A1357-A1355
X
>2UXC-A1335-A1333
X
>1N32-A1335-A1333
X
>1FJG-A1335-A1333
X
</seq>
<hsp>
0 1:0.826551542635
0 2:0.315759318921
0 3:0.350220561755
0 4:0.262853694747
0 5:0.2993032396
0 6:0.362374593422
0 7:0.369983349098
0 8:0.436099908959
0 9:0.273322729005
0 10:0.295076127285
0 11:0.324043057727
1 2:0.892759436452
1 3:0.904427795416
1 4:0.842938609833
1 5:0.836414248463
1 6:0.998017407311
1 7:0.999998796707
1 8:0.981563410221
1 9:0.880918704174
1 10:0.876861571638
1 11:0.899150386403
2 3:0.0738532702287
2 4:0.10904652548
2 5:0.0684886687904
2 6:0.181857685069
2 7:0.184934690444
2 8:0.23008120812
2 9:0.0676363505351
2 10:0.0676317624196
2 11:0.101235900827
3 4:0.161839038132
3 5:0.107167925621
3 6:0.142723972736
3 7:0.143024550049
3 8:0.18057453987
3 9:0.0964565475685
3 10:0.0779112608991
3 11:0.0732497377247
4 5:0.110804646812
4 6:0.241749496875
4 7:0.246094540253
4 8:0.314186283557
4 9:0.118069507607
4 10:0.127192335049
4 11:0.1643790346
5 6:0.227006758287
5 7:0.23004193338
5 8:0.251154880139
5 9:0.0758868133523
5 10:0.0705101688655
5 11:0.116254899753
6 7:0.0095026347784
6 8:0.191054251552
6 9:0.170475392543
6 10:0.165832246045
6 11:0.132365782737
7 8:0.187127556672
7 9:0.175424153011
7 10:0.169202111413
7 11:0.134447475576
8 9:0.238582497641
8 10:0.221958298405
8 11:0.209383453729
9 10:0.0349523296513
9 11:0.0746851069566
10 11:0.0528708996735
</hsp>