sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A2742-A2732
X
>3OGE-A21-A536
X
>3OHD-A21-A536
X
>1YIJ-0203-0213
X
>3OGY-A886-A16
X
>3CPW-0203-0213
X
>1YJ9-0203-0213
X
>1N32-A1325-A1350
X
>1VQ7-0203-0213
X
>2OTJ-0203-0213
X
>3F1H-A2641-A2648
X
>3F1F-A2641-A2648
X
</seq>
<hsp>
0 1:0.288880724159
0 2:0.371261225276
0 3:0.781025301494
0 4:0.717669952731
0 5:0.769736979664
0 6:0.847123447255
0 7:0.999337847036
0 8:0.760764171009
0 9:0.715823144994
0 10:0.943382921807
0 11:0.932328879491
1 2:0.282953493055
1 3:0.716362501294
1 4:0.651356589492
1 5:0.725226750134
1 6:0.741130486766
1 7:1.0
1 8:0.702323212756
1 9:0.670344623556
1 10:0.945383099314
1 11:0.938782748924
2 3:0.568350120474
2 4:0.629602228393
2 5:0.594848574277
2 6:0.591373944616
2 7:0.911821857799
2 8:0.518094389785
2 9:0.476390502352
2 10:0.786831892645
2 11:0.781489219491
3 4:0.329023283151
3 5:0.190253092901
3 6:0.234057901699
3 7:0.439463406207
3 8:0.149204062212
3 9:0.240297887356
3 10:0.359466951315
3 11:0.363959094028
4 5:0.286064785734
4 6:0.41921492553
4 7:0.416629334657
4 8:0.407196865136
4 9:0.436101462667
4 10:0.481818483986
4 11:0.481066989221
5 6:0.248363700252
5 7:0.428344586395
5 8:0.190679914276
5 9:0.204044400537
5 10:0.303403743548
5 11:0.311278576795
6 7:0.594565277998
6 8:0.178816341597
6 9:0.229742852528
6 10:0.433920279368
6 11:0.446759575025
7 8:0.535143726046
7 9:0.587677302479
7 10:0.343238787756
7 11:0.337804671713
8 9:0.110133337583
8 10:0.353571973283
8 11:0.360489606156
9 10:0.375280576836
9 11:0.381043777485
10 11:0.027621248507
</hsp>