sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-1396-1391
X
>3R8N-A160-A157
X
>1JJ2-01564-01547
X
>3F1F-A533-A21
X
>3CMA-0507-014
X
>3CXC-0783-0804
X
>3I56-0783-0804
X
>3OH7-A1161-A1185
X
>3R8T-A512-A26
X
>3CCE-0783-0804
X
>1QVG-0783-0804
X
>2OTL-0783-0804
X
</seq>
<hsp>
0 1:0.573865939346
0 2:0.674774741012
0 3:0.905842744609
0 4:0.862712587957
0 5:0.766483797331
0 6:0.947645346122
0 7:0.760346490103
0 8:0.756156992989
0 9:0.832961797868
0 10:0.827378421929
0 11:0.841034801656
1 2:0.480813007971
1 3:0.809284528399
1 4:0.866706715536
1 5:0.869799707907
1 6:0.999992893916
1 7:0.691905564254
1 8:0.756951258648
1 9:0.731028801547
1 10:0.911221434681
1 11:0.877354214146
2 3:0.532386820139
2 4:0.488209022881
2 5:0.530674006608
2 6:0.614359414876
2 7:0.361453968093
2 8:0.478124129948
2 9:0.436677238904
2 10:0.563170701919
2 11:0.529797592285
3 4:0.494816885174
3 5:0.507147583406
3 6:0.604856171852
3 7:0.304294113404
3 8:0.48962260397
3 9:0.48760099903
3 10:0.506300303527
3 11:0.500740810596
4 5:0.184329685144
4 6:0.158124936342
4 7:0.28512988664
4 8:0.231163758337
4 9:0.315313136705
4 10:0.175021620223
4 11:0.131289657488
5 6:0.238139030429
5 7:0.313460285509
5 8:0.26281560251
5 9:0.388708021815
5 10:0.0990158025124
5 11:0.172699935498
6 7:0.429497796448
6 8:0.32490713821
6 9:0.436095373983
6 10:0.216592725925
6 11:0.204579203744
7 8:0.274775155626
7 9:0.255045892852
7 10:0.315587435492
7 11:0.284898440719
8 9:0.257987756654
8 10:0.255048527831
8 11:0.185161673209
9 10:0.347084461719
9 11:0.273943107863
10 11:0.113385850597
</hsp>