sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1KD1-A474-A470
X
>3KNH-A281-A278
X
>3OH7-A494-A490
X
>3CCE-0474-0470
X
>3OH5-A232-A228
X
>2J03-A2229-A2242
X
>3OH7-A2182-A2195
X
>2J00-A1440-A1409
X
>3CCV-0474-0470
X
>1VQN-0474-0470
X
>3U5B-2889-2884
X
>3U5F-6901-6896
X
</seq>
<hsp>
0 1:0.647968940058
0 2:0.349684084608
0 3:0.337258248582
0 4:0.402635804402
0 5:0.481168997859
0 6:0.79323327236
0 7:0.669351843252
0 8:0.382532166205
0 9:0.210236233065
0 10:0.748940683049
0 11:0.727103548713
1 2:0.851570381251
1 3:0.71782958696
1 4:0.696076247976
1 5:0.382033596913
1 6:0.619661598956
1 7:0.464139626554
1 8:0.598945237317
1 9:0.618284939931
1 10:0.842467631992
1 11:0.821722325222
2 3:0.346272242319
2 4:0.51643190726
2 5:0.690687972799
2 6:0.995634508774
2 7:0.930580483015
2 8:0.435293546113
2 9:0.35197857356
2 10:0.992599166409
2 11:0.976747891923
3 4:0.653006493276
3 5:0.576043988606
3 6:0.882573557293
3 7:0.722248579157
3 8:0.172516383977
3 9:0.258014830826
3 10:0.906950498811
3 11:0.840534219098
4 5:0.571685414527
4 6:0.825857866725
4 7:0.849763327473
4 8:0.648229027399
4 9:0.463527019723
4 10:0.75013643172
4 11:0.772973167869
5 6:0.536615806794
5 7:0.37175542547
5 8:0.535328428305
5 9:0.433468128646
5 10:0.704825096678
5 11:0.695461663338
6 7:0.59321826904
6 8:0.854075201166
6 9:0.726080440593
6 10:0.999998913287
6 11:0.958450157531
7 8:0.673861753183
7 9:0.655385047217
7 10:0.702839361228
7 11:0.673058187133
8 9:0.304257734188
8 10:0.882468281918
8 11:0.809912218076
9 10:0.807216202748
9 11:0.766861634416
10 11:0.217725083246
</hsp>