sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3V7E-C19-C34
X
>1Q82-A499-A494
X
>2QA4-02729-02703
X
>1VQ5-0499-0494
X
>1K8A-A103-A37
X
>3CCV-0783-0804
X
>3CC2-0103-037
X
>1VQ6-0103-037
X
>1YJN-0783-0804
X
>3U5D-1780-1801
X
>1VQ9-0103-037
X
</seq>
<hsp>
0 1:0.279324503766
0 2:0.549591285513
0 3:0.426205342108
0 4:0.81266517289
0 5:0.769745095012
0 6:0.827490161247
0 7:0.836839307993
0 8:0.741668220379
0 9:0.765401375638
0 10:0.832667800191
1 2:0.608712831541
1 3:0.395723282818
1 4:0.938493054746
1 5:0.810211992302
1 6:0.946925581769
1 7:0.96550182171
1 8:0.785611769274
1 9:0.794722540795
1 10:0.934284111045
2 3:0.79675388841
2 4:1.0
2 5:0.966278739096
2 6:0.953070883266
2 7:0.979367631907
2 8:0.894556683967
2 9:0.89789189675
2 10:0.915313503338
3 4:0.840461232309
3 5:0.798974915495
3 6:0.8425399067
3 7:0.843616783611
3 8:0.740593229793
3 9:0.746396151704
3 10:0.783449268463
4 5:0.476629367948
4 6:0.179641785413
4 7:0.175371498551
4 8:0.436744513185
4 9:0.437016510187
4 10:0.320221977058
5 6:0.571993373904
5 7:0.508535512492
5 8:0.164710659512
5 9:0.2868641144
5 10:0.568667249943
6 7:0.209772619267
6 8:0.501658463178
6 9:0.462715713177
6 10:0.237512196495
7 8:0.421040272429
7 9:0.432613086364
7 10:0.221878120027
8 9:0.202634580439
8 10:0.446022970709
9 10:0.411297358573
</hsp>