sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YI2-01670-01664
X
>1VQL-01670-01664
X
>1YHQ-01670-01664
X
>2QEX-02345-02357
X
>3CD6-01670-01664
X
>2QA4-01486-01620
X
>1VQ6-01487-01621
X
>2QA4-02344-02356
X
>3CCV-01487-01621
X
>2OTJ-01487-01621
X
</seq>
<hsp>
0 1:0.211091200064
0 2:0.138726703423
0 3:0.393458536381
0 4:0.295790855123
0 5:0.594208002453
0 6:0.797206270839
0 7:0.390225984797
0 8:0.877350903909
0 9:0.868385630235
1 2:0.266409845773
1 3:0.390861845189
1 4:0.283671007526
1 5:0.651525846313
1 6:0.845863310989
1 7:0.521389201263
1 8:0.999991387994
1 9:0.967776794647
2 3:0.409961227911
2 4:0.291674407219
2 5:0.595044797096
2 6:0.760146451328
2 7:0.419671962372
2 8:0.84322694326
2 9:0.848857551782
3 4:0.319297869181
3 5:0.388813085919
3 6:0.595743784192
3 7:0.439579791821
3 8:0.829073795975
3 9:0.809204301661
4 5:0.55517732144
4 6:0.797767733245
4 7:0.487481291808
4 8:0.959248850562
4 9:0.968049639166
5 6:0.366284748332
5 7:0.434511068028
5 8:0.542678564287
5 9:0.560657790604
6 7:0.651947745003
6 8:0.431773775923
6 9:0.406653451783
7 8:0.648896034687
7 9:0.624048169527
8 9:0.249988386483
</hsp>