sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1M90-A1373-A1639
X
>1VQ8-01373-01639
X
>1S72-01373-01639
X
>3CC7-01373-01639
X
>3CC4-01373-01639
X
>2ZJR-X2085-X2105
X
>1VQ9-02538-02535
X
>3CCL-0273-0355
X
>3CC4-0273-0355
X
>3CCJ-0273-0355
X
</seq>
<hsp>
0 1:0.185632895899
0 2:0.104243212821
0 3:0.125874567754
0 4:0.156408476713
0 5:0.671564119624
0 6:0.540253392704
0 7:1.0
0 8:0.986053442676
0 9:0.929948056464
1 2:0.211077243994
1 3:0.20747344934
1 4:0.233063518817
1 5:0.595042373104
1 6:0.491722183514
1 7:0.992429015834
1 8:0.955840295974
1 9:0.906001423663
2 3:0.0572935198791
2 4:0.0712570716967
2 5:0.612851610598
2 6:0.48197061266
2 7:0.931119776518
2 8:0.917090002293
2 9:0.861688657209
3 4:0.0679086617464
3 5:0.596265219822
3 6:0.471354078933
3 7:0.931385234829
3 8:0.912811694878
3 9:0.859973297318
4 5:0.584312295477
4 6:0.4357019314
4 7:0.886156043883
4 8:0.865318131007
4 9:0.812290279775
5 6:0.366701427095
5 7:0.62112376762
5 8:0.587817661662
5 9:0.555201107932
6 7:0.565714553973
6 8:0.507980569045
6 9:0.479280427696
7 8:0.181556558196
7 9:0.152224478274
8 9:0.0883996260261
</hsp>