sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-741-737
X
>1YJW-943-938
X
>2J01-B44-B39
X
>2J03-B44-B39
X
>3OI1-B44-B39
X
>3OHZ-B44-B39
X
>3KNK-B44-B39
X
>3R8S-B44-B39
X
>1MJI-D19-D14
X
>1MJI-C19-C14
X
</seq>
<hsp>
0 1:0.744856430325
0 2:0.980063938436
0 3:1.0
0 4:0.735302642618
0 5:0.736810317094
0 6:0.378188733412
0 7:0.911993894033
0 8:0.814484602319
0 9:0.841773278686
1 2:0.502261698691
1 3:0.512980418989
1 4:0.293994632717
1 5:0.274734096049
1 6:0.450341100932
1 7:0.672361808733
1 8:0.56823505212
1 9:0.664966773183
2 3:0.0318661230978
2 4:0.496145305532
2 5:0.501305598891
2 6:0.803370799684
2 7:0.987074271389
2 8:0.887484682129
2 9:0.979655277073
3 4:0.503092140284
3 5:0.5089572639
3 6:0.81927057242
3 7:0.989326773517
3 8:0.894398943171
3 9:0.986633505199
4 5:0.044234033272
4 6:0.495665588623
4 7:0.617702326861
4 8:0.656404202703
4 9:0.714111123305
5 6:0.492222835837
5 7:0.612265247885
5 8:0.655962994742
5 9:0.71302040386
6 7:0.682754084809
6 8:0.552585159857
6 9:0.60545925518
7 8:0.480376560379
7 9:0.448636248249
8 9:0.228965433053
</hsp>