sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3G78-A119-A22
X
>1GTR-B34-B30
X
>1EXD-B34-B30
X
>1O0C-B34-B30
X
>2RD2-B34-B30
X
>1QTQ-B34-B30
X
>1ZJW-B34-B30
X
>1EUY-B34-B30
X
</seq>
<hsp>
0 1:0.524785240617
0 2:1.0
0 3:0.330459553236
0 4:0.478101915138
0 5:0.670907531414
0 6:0.429366191757
0 7:0.55909116282
1 2:0.803101263135
1 3:0.509628353551
1 4:0.447579473683
1 5:0.566299361445
1 6:0.392122024518
1 7:0.420553065265
2 3:0.852181772647
2 4:0.589005936646
2 5:0.419385217586
2 6:0.634738426419
2 7:0.498213302928
3 4:0.275190417452
3 5:0.512142265848
3 6:0.291572141073
3 7:0.450510561552
4 5:0.315343907573
4 6:0.157779855715
4 7:0.25764074285
5 6:0.308886718854
5 7:0.192068504537
6 7:0.204195750208
</hsp>