sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2VQF-A1296-A1197
X
>3R8N-A1318-A1219
X
>2UUA-A1296-A1197
X
>1XMQ-A1291-A1192
X
>2J02-A1296-A1197
X
>2J00-A1296-A1197
X
>3R8O-A1318-A1219
X
>2UXC-A1296-A1197
X
>2VQE-A1296-A1197
X
>1FJG-A1296-A1197
X
</seq>
<hsp>
0 1:0.800514766346
0 2:0.156976196677
0 3:0.235225577849
0 4:0.390510459055
0 5:0.38619547214
0 6:1.0
0 7:0.564172880894
0 8:0.423418938652
0 9:0.533207562667
1 2:0.71170511155
1 3:0.671778597159
1 4:0.968857135186
1 5:0.956721087055
1 6:0.768726638415
1 7:0.635946248983
1 8:0.685280792907
1 9:0.502217369945
2 3:0.215736848884
2 4:0.426459973547
2 5:0.414879372622
2 6:0.978250958879
2 7:0.439855442348
2 8:0.384075408668
2 9:0.462268491449
3 4:0.425798787809
3 5:0.417618564278
3 6:0.866677041583
3 7:0.459843656043
3 8:0.281908545932
3 9:0.356147080757
4 5:0.0265539813217
4 6:0.960428168101
4 7:0.639113703302
4 8:0.392611160039
4 9:0.568903923808
5 6:0.956500721122
5 7:0.621635646948
5 8:0.381788702952
5 9:0.556979454818
6 7:0.86519046506
6 8:0.856363898974
6 9:0.598810541653
7 8:0.540908536217
7 9:0.355897837937
8 9:0.369533271193
</hsp>