sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2PXU-B17-B33
X
>3R8N-A756-A580
X
>3LQX-B17-B33
X
>3R8O-A756-A580
X
>1LNG-B62-B78
X
>2PXT-B17-B33
X
>2R8S-R114-R152
X
>2PXP-B17-B33
X
>2PXL-B17-B33
X
>2V3C-M60-M76
X
>1HQ1-B17-B33
X
>1DUL-B17-B33
X
</seq>
<hsp>
0 1:0.061940069145
0 2:0.0409302409628
0 3:0.0821863799402
0 4:0.0533293920512
0 5:0.0650857802145
0 6:0.98281085421
0 7:0.0677135611773
0 8:0.0601000698087
0 9:0.0997706868763
0 10:0.073940556377
0 11:0.0677962411351
1 2:0.0392481464901
1 3:0.0732846787222
1 4:0.0621639821277
1 5:0.0597763755489
1 6:0.972009850732
1 7:0.0574847522484
1 8:0.0602215074436
1 9:0.10274633407
1 10:0.0672829668615
1 11:0.0595458719528
2 3:0.0749799057687
2 4:0.0357228335656
2 5:0.0359720648018
2 6:0.964330824194
2 7:0.0369407565919
2 8:0.0374624040922
2 9:0.0853679961087
2 10:0.0418676768344
2 11:0.0352952216952
3 4:0.0944752843083
3 5:0.103680837331
3 6:0.999999737388
3 7:0.0901442177333
3 8:0.0909412715697
3 9:0.129317483603
3 10:0.0946740903814
3 11:0.0942113115778
4 5:0.0400972887072
4 6:0.937609006469
4 7:0.0428489804624
4 8:0.0406477209208
4 9:0.0725183496697
4 10:0.0557205224798
4 11:0.0492579034154
5 6:0.940648064706
5 7:0.0225698119612
5 8:0.0252949807232
5 9:0.0653387153842
5 10:0.0286075490934
5 11:0.0191008652849
6 7:0.942581867913
6 8:0.94448253856
6 9:0.906920634632
6 10:0.95021626113
6 11:0.948724366239
7 8:0.0171207559437
7 9:0.0644600725084
7 10:0.0261075686278
7 11:0.0196491709763
8 9:0.0548586338592
8 10:0.0326293730164
8 11:0.0251576708419
9 10:0.0712737580899
9 11:0.0683984101379
10 11:0.0130165513277
</hsp>