sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2PXQ-B17-B33
X
>2PXF-B17-B33
X
>3NDB-M79-M95
X
>2PXK-B17-B33
X
>2PXD-B17-B33
X
>2PXE-B17-B33
X
>2PXV-B17-B33
X
>2PXB-B17-B33
X
</seq>
<hsp>
0 1:0.923260355599
0 2:0.554805935336
0 3:0.74811273922
0 4:0.832879760836
0 5:0.681747287778
0 6:0.521401305817
0 7:0.764836944043
1 2:1.0
1 3:0.696670730283
1 4:0.922724533654
1 5:0.725651424322
1 6:0.683562768542
1 7:0.746655483908
2 3:0.618923004651
2 4:0.528273569534
2 5:0.786249966637
2 6:0.580902406058
2 7:0.529079577267
3 4:0.367693428578
3 5:0.598279013961
3 6:0.464155062336
3 7:0.272485129191
4 5:0.767458308954
4 6:0.519842482608
4 7:0.29654345591
5 6:0.683042272345
5 7:0.572421020795
6 7:0.494280766432
</hsp>