sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNH-A1343-A1313
X
>3OGY-A1352-A1322
X
>3CCJ-01616-01492
X
>3OGE-A1352-A1322
X
>2ZJR-X167-X180
X
>3OI0-A1352-A1322
X
>3OHY-A1352-A1322
X
</seq>
<hsp>
0 1:0.578688433853
0 2:0.540335625056
0 3:0.578386619309
0 4:1.0
0 5:0.714263635203
0 6:0.717794726113
1 2:0.310149678558
1 3:0.0201483445893
1 4:0.733204602238
1 5:0.281931606988
1 6:0.294252691025
2 3:0.305867891548
2 4:0.545572516331
2 5:0.348605154
2 6:0.345476488598
3 4:0.728909678333
3 5:0.268437261315
3 6:0.280657992616
4 5:0.67611608336
4 6:0.665008840735
5 6:0.0193676910159
</hsp>