sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OGE-A421-A400
X
>3OGY-A421-A400
X
>3OI0-A421-A400
X
>3OHY-A421-A400
X
>1YJ9-088-068
X
>3I56-088-068
X
>1YJN-088-068
X
>3G71-088-068
X
>1KD1-A88-A68
X
>2QA4-088-068
X
</seq>
<hsp>
0 1:0.0249843748718
0 2:0.310232044903
0 3:0.312033960899
0 4:0.94401415109
0 5:0.961807744156
0 6:0.906206008809
0 7:0.868435912095
0 8:0.964820036428
0 9:1.0
1 2:0.298585743497
1 3:0.30122125157
1 4:0.936782609162
1 5:0.955279998296
1 6:0.899866976853
1 7:0.862152072664
1 8:0.959602246264
1 9:0.995856049128
2 3:0.0219374157073
2 4:0.756101760593
2 5:0.790957366532
2 6:0.725778119961
2 7:0.728640264729
2 8:0.803490003288
2 9:0.83436499424
3 4:0.756538063957
3 5:0.79096584142
3 6:0.725408251561
3 7:0.728903392918
3 8:0.802125337376
3 9:0.828902227974
4 5:0.0746781936196
4 6:0.15580619439
4 7:0.17765894553
4 8:0.156227449324
4 9:0.275398416893
5 6:0.157836939846
5 7:0.139257718692
5 8:0.13062821655
5 9:0.256028696294
6 7:0.221649064444
6 8:0.244944538553
6 9:0.265326574205
7 8:0.176457038756
7 9:0.305760781899
8 9:0.280855136088
</hsp>