sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1Q86-A1956-A1918
X
>3OHC-A429-A473
X
>2QA4-0229-0258
X
>3CD6-01956-01918
X
>1YI2-01956-01918
X
>1YIT-01956-01918
X
>1VQM-01956-01918
X
>3KNI-A2240-A2201
X
>2QA4-01955-01917
X
>3G6E-0214-0202
X
>1VQ9-0214-0202
X
</seq>
<hsp>
0 1:0.645688008195
0 2:0.802693691656
0 3:0.31830868698
0 4:0.144845424578
0 5:0.0897199809021
0 6:0.2686928883
0 7:0.80353819297
0 8:0.30053763194
0 9:0.38743883784
0 10:0.349407768264
1 2:1.0
1 3:0.442275028861
1 4:0.625816292189
1 5:0.60850224181
1 6:0.478551159197
1 7:0.486662588578
1 8:0.50468391396
1 9:0.600156961526
1 10:0.51714633901
2 3:0.766072415326
2 4:0.746482885138
2 5:0.787660277804
2 6:0.781728496435
2 7:0.798228113818
2 8:0.719388169785
2 9:0.516780443891
2 10:0.597858884239
3 4:0.239568271028
3 5:0.294675321816
3 6:0.160137745274
3 7:0.623696622918
3 8:0.313837834435
3 9:0.367990632327
3 10:0.286515526993
4 5:0.120772768878
4 6:0.241115850828
4 7:0.75940737081
4 8:0.272789099275
4 9:0.355096539659
4 10:0.305027327331
5 6:0.275103268783
5 7:0.770671171994
5 8:0.239683018554
5 9:0.366144123529
5 10:0.319691962272
6 7:0.621154221718
6 8:0.316201668681
6 9:0.335729009054
6 10:0.259823934825
7 8:0.581096022588
7 9:0.567436416521
7 10:0.523564748319
8 9:0.309850394724
8 10:0.243388074591
9 10:0.111253607738
</hsp>