sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A1236-A1299
X
>3U5F-61465-61532
X
>3KNI-A2130-A2112
X
>2ZJR-X1293-X1267
X
>2J01-A1327-A1301
X
>3CCE-0670-0652
X
>3CCL-0670-0652
X
>3CD6-0670-0652
X
>3CCV-0670-0652
X
>3CCM-0670-0652
X
</seq>
<hsp>
0 1:0.441887771143
0 2:0.815602411832
0 3:0.451085739042
0 4:0.485626998163
0 5:0.885636805978
0 6:0.819000293443
0 7:0.797305319997
0 8:0.890022412593
0 9:0.825366390856
1 2:0.591173926335
1 3:0.443727700954
1 4:0.38102685811
1 5:0.795001208229
1 6:0.762807577686
1 7:0.72932319727
1 8:0.780734653212
1 9:0.735416028039
2 3:0.962622544704
2 4:0.614032791213
2 5:0.941348416318
2 6:0.999998275511
2 7:0.93999649987
2 8:0.959943553808
2 9:0.890775883002
3 4:0.499440183126
3 5:0.687916385037
3 6:0.586296658762
3 7:0.591755697118
3 8:0.657993098861
3 9:0.650858045755
4 5:0.559112505749
4 6:0.542140769773
4 7:0.484733683587
4 8:0.571830159531
4 9:0.480342676542
5 6:0.175755308967
5 7:0.137909927219
5 8:0.108936951596
5 9:0.150550031364
6 7:0.140004174711
6 8:0.197534905657
6 9:0.203091115499
7 8:0.134744323491
7 9:0.130154088514
8 9:0.165130216245
</hsp>