sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CPW-0366-0259
X
>3CC7-0366-0259
X
>1YHQ-0366-0259
X
>1K8A-A366-A259
X
>1YIJ-0366-0259
X
>1YJN-0366-0259
X
>1M90-A366-A259
X
>1S72-0366-0259
X
>1JJ2-0366-0259
X
>3CC2-0366-0259
X
>1K9M-A366-A259
X
>1KD1-A366-A259
X
>1N8R-A366-A259
X
>1NJI-A366-A259
X
>1Q82-A366-A259
X
>1FFK-0365-0258
X
</seq>
<hsp>
0 1:0.511684650708
0 2:0.482462312188
0 3:0.562741179556
0 4:0.524000965095
0 5:0.73226045192
0 6:0.525004371184
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1 11:0.647335495237
1 12:0.697920384336
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1 15:0.917253019392
2 3:0.441329253254
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5 15:1.0
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11 12:0.128879951358
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12 13:0.199384457106
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13 14:0.153056824598
13 15:0.593536027854
14 15:0.606234955225
</hsp>