sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A196-A39
X
>3F1H-A199-A39
X
>3F1F-A199-A39
X
>3CCR-0173-032
X
>3CCJ-0173-032
X
>3CCS-0173-032
X
>3CD6-0173-032
X
>2QA4-0173-032
X
>1K8A-A173-A32
X
</seq>
<hsp>
0 1:0.617168613719
0 2:0.633424679711
0 3:0.90747244724
0 4:0.999996994811
0 5:0.872240670803
0 6:0.733589500496
0 7:0.545997322129
0 8:0.698216499139
1 2:0.0337731425301
1 3:0.611493521173
1 4:0.792384760447
1 5:0.604139215897
1 6:0.584064414511
1 7:0.610565550082
1 8:0.613474412653
2 3:0.606534983018
2 4:0.781310641685
2 5:0.601643136653
2 6:0.58440918194
2 7:0.622137404247
2 8:0.618208024437
3 4:0.326425990154
3 5:0.0679563205429
3 6:0.271733228328
3 7:0.530251546623
3 8:0.322019204528
4 5:0.351819812213
4 6:0.422943292947
4 7:0.707022154203
4 8:0.468150957477
5 6:0.24723032717
5 7:0.486440990953
5 8:0.281741668377
6 7:0.37697382084
6 8:0.203353282055
7 8:0.325451448626
</hsp>