sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2UUB-A1200-A1199
X
>2VQE-A1200-A1199
X
>2UXC-A1200-A1199
X
>2UUA-A1200-A1199
X
>2VQF-A1200-A1199
X
>1N32-A1200-A1199
X
>1XMQ-A1195-A1194
X
>1FJG-A1200-A1199
X
</seq>
<hsp>
0 1:0.338719389313
0 2:0.484025051903
0 3:0.364958147724
0 4:0.268207615907
0 5:0.451886463125
0 6:0.974701574135
0 7:0.669441811322
1 2:0.411927476022
1 3:0.361795690204
1 4:0.33133429681
1 5:0.451663426529
1 6:0.892662357801
1 7:0.552520377636
2 3:0.3416496707
2 4:0.455128996325
2 5:0.485163316101
2 6:0.886549507502
2 7:0.634957968682
3 4:0.364257958084
3 5:0.642127425465
3 6:1.0
3 7:0.748978527936
4 5:0.465643530226
4 6:0.801086896351
4 7:0.599596928108
5 6:0.766900890927
5 7:0.429475026725
6 7:0.537219029797
</hsp>