sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-12568-12622
X
>3U5H-52569-52623
X
>2ZJR-X2234-X2288
X
>3R8S-A2440-A2494
X
>3KNI-A2352-A2406
X
>3R8S-A2301-A2303
X
>1DQH-B7-B6
X
</seq>
<hsp>
0 1:0.0203361454102
0 2:0.0574298818888
0 3:0.0494848561831
0 4:0.0585549475735
0 5:0.526178538327
0 6:0.977811298364
1 2:0.0603856410954
1 3:0.0520432955065
1 4:0.062009498069
1 5:0.535534026263
1 6:0.981461593184
2 3:0.0367939012482
2 4:0.0576354480294
2 5:0.517284435676
2 6:0.999999803978
3 4:0.0723980176779
3 5:0.512637265176
3 6:0.979826400724
4 5:0.517936721628
4 6:0.988458909697
5 6:0.806140182068
</hsp>