sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1XMQ-A1103-A1102
X
>3KNK-A1210-A1208
X
>2VQE-A1108-A1107
X
>2VQF-A1108-A1107
X
>2J01-A1205-A1203
X
>2J03-A1205-A1203
X
>1KH6-A33-A5
X
</seq>
<hsp>
0 1:0.190162929371
0 2:0.0300823065947
0 3:0.0300823065947
0 4:0.180470442432
0 5:0.182425573314
0 6:1.0
1 2:0.180723727696
1 3:0.180723727696
1 4:0.0519223704204
1 5:0.0503419072471
1 6:0.904082297991
2 3:0.0
2 4:0.168053124782
2 5:0.169981104946
2 6:0.988105687994
3 4:0.168053124782
3 5:0.169981104946
3 6:0.988105687994
4 5:0.00479123930325
4 6:0.890613071099
5 6:0.891262848134
</hsp>