sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2VQE-A1071-A1045
X
>1XMQ-A1066-A1040
X
>2UXC-A1071-A1045
X
>2VQF-A1071-A1045
X
>2UUA-A1071-A1045
X
>1N32-A1071-A1045
X
>2UUB-A1071-A1045
X
>1FJG-A1071-A1045
X
</seq>
<hsp>
0 1:0.44954918202
0 2:0.480398966819
0 3:0.745006456508
0 4:0.387044543469
0 5:0.798487987109
0 6:0.457675347735
0 7:0.581048599308
1 2:0.381949327072
1 3:1.0
1 4:0.619859557923
1 5:0.927740345072
1 6:0.527390747309
1 7:0.437067537262
2 3:0.945984531284
2 4:0.625372634377
2 5:0.824900711723
2 6:0.512724187515
2 7:0.583214898036
3 4:0.468926232655
3 5:0.534598089405
3 6:0.538276173571
3 7:0.745913202035
4 5:0.713468690477
4 6:0.355947743165
4 7:0.521577764811
5 6:0.498619381978
5 7:0.678801162275
6 7:0.310474002315
</hsp>