sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A1922-A1899
X
>2QA4-01915-01904
X
>1VQ7-01916-01905
X
>1VQO-01916-01905
X
>3CXC-01916-01905
X
>1N8R-A1916-A1905
X
>1KD1-A1916-A1905
X
>1K8A-A1916-A1905
X
</seq>
<hsp>
0 1:0.758643057972
0 2:0.716958970967
0 3:0.975600418871
0 4:0.958294018382
0 5:0.995040425161
0 6:0.983243321426
0 7:0.999995431054
1 2:0.193297454808
1 3:0.259618459919
1 4:0.302716923099
1 5:0.299966426764
1 6:0.288546428399
1 7:0.302050519693
2 3:0.281901799703
2 4:0.270099788752
2 5:0.307391542631
2 6:0.299602080383
2 7:0.313525493923
3 4:0.152863453034
3 5:0.122066110815
3 6:0.132393381062
3 7:0.141375378304
4 5:0.0820457486273
4 6:0.0907410579504
4 7:0.104379983695
5 6:0.0423723697788
5 7:0.0493706457859
6 7:0.0420190960376
</hsp>