sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHK-A1184-A1185
X
>3FTF-C9-C10
X
>1YJ9-01298-01299
X
>1VQ5-01298-01299
X
>3CME-013-014
X
>1VQ8-013-014
X
>2OTL-01298-01299
X
>1YIJ-013-014
X
>3CC7-013-014
X
>3U5H-5806-5807
X
>3CC7-01664-01665
X
>3CC2-01664-01665
X
</seq>
<hsp>
0 1:0.999999502215
0 2:0.380981059599
0 3:0.367656653285
0 4:0.560947771463
0 5:0.471421055679
0 6:0.50577038625
0 7:0.597458394724
0 8:0.632951732649
0 9:0.585085330907
0 10:0.844610370693
0 11:0.853402929633
1 2:0.782637543322
1 3:0.823718109379
1 4:0.820224185009
1 5:0.77127319581
1 6:0.67799417134
1 7:0.67729129658
1 8:0.689559460445
1 9:0.571829967449
1 10:0.516759995574
1 11:0.547449827977
2 3:0.140474183719
2 4:0.401399463372
2 5:0.23886950866
2 6:0.19614316575
2 7:0.314175258234
2 8:0.412264516373
2 9:0.286094811952
2 10:0.535750257949
2 11:0.530014271206
3 4:0.46941868851
3 5:0.295032250899
3 6:0.189019205026
3 7:0.401275481492
3 8:0.494780839411
3 9:0.332787714467
3 10:0.589054704396
3 11:0.5888207884
4 5:0.219617544148
4 6:0.459483098173
4 7:0.223504395915
4 8:0.217017674542
4 9:0.440741736069
4 10:0.594793411655
4 11:0.568484382814
5 6:0.278400707712
5 7:0.191027342053
5 8:0.312405433947
5 9:0.342499596231
5 10:0.564613911917
5 11:0.538804056536
6 7:0.326499035664
6 8:0.451142991749
6 9:0.239525751733
6 10:0.475212940001
6 11:0.473340923907
7 8:0.186337825583
7 9:0.275263222579
7 10:0.421596856727
7 11:0.386251999088
8 9:0.333852563228
8 10:0.415654441411
8 11:0.394338436535
9 10:0.294624726819
9 11:0.304706234826
10 11:0.0916085118506
</hsp>