sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2CKY-A9-A10
X
>1YI2-02036-02037
X
>3OGE-A691-A692
X
>3CC4-02036-02037
X
>3CPW-02036-02037
X
>3R8T-A2723-A2724
X
>3KNK-A195-A196
X
>1XMQ-A607-A608
X
>1YIJ-0172-0173
X
>1YJW-0172-0173
X
</seq>
<hsp>
0 1:0.554898650838
0 2:0.426864138106
0 3:0.501109918575
0 4:0.483430585233
0 5:0.590274422428
0 6:0.626180938663
0 7:0.710045549652
0 8:0.708808181966
0 9:0.635064639121
1 2:0.517959366956
1 3:0.140326282429
1 4:0.13260720727
1 5:0.818476600105
1 6:0.816805076519
1 7:0.733963785818
1 8:0.71047260633
1 9:0.640698614262
2 3:0.415127144336
2 4:0.423635367121
2 5:0.626320353002
2 6:0.637040074989
2 7:0.752786450311
2 8:0.603825447518
2 9:0.498267412771
3 4:0.0829731829036
3 5:0.731862823953
3 6:0.776785449641
3 7:0.689430939705
3 8:0.65879993277
3 9:0.57037328865
4 5:0.759216145917
4 6:0.764120651806
4 7:0.658960845285
4 8:0.642485525309
4 9:0.560815134673
5 6:0.91120454504
5 7:0.999997419777
5 8:0.902942865088
5 9:0.832601597855
6 7:0.632685841724
6 8:0.430836184715
6 9:0.434741745074
7 8:0.394859012798
7 9:0.392981905069
8 9:0.131507303681
</hsp>