sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J02-V52-V53
X
>3OH5-A2016-A2017
X
>3OHJ-A365-A366
X
>3KNI-A2035-A2036
X
>1EFW-D6-D49
X
>3U5D-12053-12054
X
>1NJI-A1198-A1199
X
>1YLS-A0-A1
X
>3B4C-B38-B39
X
>2ZJR-X1048-X1049
X
</seq>
<hsp>
0 1:0.853619118654
0 2:0.919943641237
0 3:0.999999542423
0 4:0.66946049769
0 5:0.610895780377
0 6:0.762195878756
0 7:0.799798124149
0 8:0.919870109957
0 9:0.826655202926
1 2:0.374584114473
1 3:0.352364110945
1 4:0.489461996305
1 5:0.441039321671
1 6:0.426143414851
1 7:0.38599727484
1 8:0.44551536624
1 9:0.485259459887
2 3:0.319404094504
2 4:0.372712865169
2 5:0.49270875108
2 6:0.429833796647
2 7:0.491449095231
2 8:0.509583974067
2 9:0.532299473541
3 4:0.499439709557
3 5:0.517128501353
3 6:0.357473968617
3 7:0.412168321877
3 8:0.372246569139
3 9:0.414619752142
4 5:0.252139263464
4 6:0.288283961727
4 7:0.365195610853
4 8:0.451447862073
4 9:0.396324422862
5 6:0.279310332972
5 7:0.268863652445
5 8:0.415322978762
5 9:0.324975977393
6 7:0.191131716489
6 8:0.220301279416
6 9:0.1636345973
7 8:0.16770887953
7 9:0.166272744874
8 9:0.169539309326
</hsp>