sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A2403-A2404
X
>3U5H-5387-5388
X
>3R8N-A98-A99
X
>2ZJR-X1869-X1870
X
>1FFK-01685-01686
X
>3G9C-F6-F7
X
>1YHQ-0595-0596
X
>3G8T-F8-F9
X
>1YIJ-0595-0596
X
>3CC7-0595-0596
X
>1NJI-A595-A596
X
>1K8A-A595-A596
X
</seq>
<hsp>
0 1:0.309520243163
0 2:0.715895951281
0 3:0.447362154077
0 4:0.422713651876
0 5:0.608343774468
0 6:0.773485249378
0 7:0.451719892998
0 8:0.775729266961
0 9:0.735470854043
0 10:0.718422483286
0 11:0.708709860797
1 2:0.846989275414
1 3:0.559687751961
1 4:0.471363327961
1 5:0.703349806932
1 6:0.746156403832
1 7:0.523355097157
1 8:0.751277974788
1 9:0.721334761303
1 10:0.672899791325
1 11:0.669837196621
2 3:0.630781368516
2 4:0.643878069958
2 5:0.641320230449
2 6:0.965205142673
2 7:0.630586671424
2 8:0.972143214769
2 9:0.963163627955
2 10:0.999998619187
2 11:0.99337733895
3 4:0.338821542302
3 5:0.416437771371
3 6:0.663913221889
3 7:0.351448230636
3 8:0.653648044813
3 9:0.631424556912
3 10:0.629697728401
3 11:0.627203943281
4 5:0.317840039811
4 6:0.456312068149
4 7:0.140367515259
4 8:0.4438006406
4 9:0.403037039443
4 10:0.421072405019
4 11:0.399740364868
5 6:0.431777201117
5 7:0.200557236702
5 8:0.449388405324
5 9:0.452243950699
5 10:0.477077744165
5 11:0.468731964745
6 7:0.419914375261
6 8:0.0765244402305
6 9:0.157891328067
6 10:0.151672710753
6 11:0.212300091237
7 8:0.425677877818
7 9:0.40345287248
7 10:0.415528478638
7 11:0.400723376135
8 9:0.0990337759956
8 10:0.127153816287
8 11:0.185785181459
9 10:0.117369680484
9 11:0.135277225985
10 11:0.101925509557
</hsp>