sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A2287-A2288
X
>3KNI-A870-A871
X
>3CC7-01505-01506
X
>3CD6-01505-01506
X
>354D-B4-B5
X
>1M5V-B18-B19
X
>2OTJ-0943-0944
X
>1N8R-A2579-A2580
X
>1YIT-02579-02580
X
>1YJ9-01505-01506
X
>2J00-A1489-A1490
X
>3U5F-61774-61775
X
</seq>
<hsp>
0 1:0.457688839122
0 2:0.999990731919
0 3:0.91656670425
0 4:0.487062499393
0 5:0.543414722084
0 6:0.588377033719
0 7:0.557928463298
0 8:0.518899111233
0 9:0.908468340152
0 10:0.812010612581
0 11:0.85070057891
1 2:0.975778262268
1 3:0.88170608692
1 4:0.512407756899
1 5:0.672154060501
1 6:0.561924604888
1 7:0.494815947573
1 8:0.592768313569
1 9:0.851583274804
1 10:0.88551241159
1 11:0.900976260477
2 3:0.140056967892
2 4:0.710711271499
2 5:0.499434643549
2 6:0.808463518208
2 7:0.758159260289
2 8:0.679569384429
2 9:0.217028725803
2 10:0.550885495303
2 11:0.552633020351
3 4:0.663802530488
3 5:0.450887740927
3 6:0.771982679617
3 7:0.711765091708
3 8:0.630459686687
3 9:0.224437984608
3 10:0.52838233868
3 11:0.526347994978
4 5:0.327764924542
4 6:0.259524211961
4 7:0.298157372921
4 8:0.280723931923
4 9:0.552162895172
4 10:0.557019846856
4 11:0.552925247007
5 6:0.46875029333
5 7:0.434256199305
5 8:0.292192217442
5 9:0.423017850398
5 10:0.405342494827
5 11:0.441610590516
6 7:0.201313880437
6 8:0.255003499673
6 9:0.636475988917
6 10:0.541655784139
6 11:0.552011426587
7 8:0.218089255935
7 9:0.607619067233
7 10:0.5125819154
7 11:0.561329477016
8 9:0.542945357574
8 10:0.358454916979
8 11:0.41730917959
9 10:0.458310125299
9 11:0.428863010814
10 11:0.208169650649
</hsp>