sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A2474-A2475
X
>1VQN-0567-0568
X
>2VQF-A1056-A1057
X
>3F1F-A2841-A2842
X
>3CCR-01288-01289
X
>1FFK-0458-0459
X
>3CCV-0459-0460
X
>2H0X-B93-B94
X
>1K8A-A2473-A2474
X
>1YJN-02473-02474
X
>3G6E-02473-02474
X
</seq>
<hsp>
0 1:0.648459682066
0 2:0.999998643842
0 3:0.945189607294
0 4:0.449671049584
0 5:0.726594435862
0 6:0.839450777308
0 7:0.748607727106
0 8:0.654499004022
0 9:0.643583959018
0 10:0.74022019389
1 2:0.439094332552
1 3:0.500303049524
1 4:0.501315173172
1 5:0.355857757619
1 6:0.457834887221
1 7:0.266446588497
1 8:0.368758702523
1 9:0.308436052973
1 10:0.313499431995
2 3:0.350582018195
2 4:0.717234942834
2 5:0.540452932996
2 6:0.572491280654
2 7:0.35223483061
2 8:0.556435802786
2 9:0.480083562641
2 10:0.505387494222
3 4:0.699183818063
3 5:0.592007782558
3 6:0.676714496145
3 7:0.417261690752
3 8:0.522308141012
3 9:0.432011028363
3 10:0.570643053423
4 5:0.486435584808
4 6:0.587772458584
4 7:0.446813164813
4 8:0.401715540084
4 9:0.415577589887
4 10:0.538509439489
5 6:0.163775945804
5 7:0.239077149785
5 8:0.199326855122
5 9:0.253718695627
5 10:0.156566156664
6 7:0.323054460016
6 8:0.294376486643
6 9:0.360319483225
6 10:0.185756256951
7 8:0.245205317201
7 9:0.219258166548
7 10:0.251686753917
8 9:0.134095771486
8 10:0.210694047897
9 10:0.2330669712
</hsp>