sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1XMQ-A1226-A1250
X
>3I56-0630-01314
X
>2UUB-A1231-A1255
X
>2QEX-0630-01314
X
>1K9M-A630-A1314
X
>3CCV-0630-01314
X
>1VQP-0630-01314
X
>1VQL-0630-01314
X
</seq>
<hsp>
0 1:0.936873581933
0 2:0.792390482394
0 3:0.96062688692
0 4:0.900196318089
0 5:0.89364950598
0 6:0.977495272257
0 7:1.0
1 2:0.483024874649
1 3:0.242652486535
1 4:0.203906847141
1 5:0.260384295052
1 6:0.274442154427
1 7:0.294121018404
2 3:0.395481973605
2 4:0.371459021283
2 5:0.317499331456
2 6:0.383089765202
2 7:0.410004297715
3 4:0.12179331946
3 5:0.176573294475
3 6:0.162794249467
3 7:0.199813193877
4 5:0.117096866676
4 6:0.132660421653
4 7:0.160795185177
5 6:0.0970390845031
5 7:0.123070692113
6 7:0.0524179639901
</hsp>