sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHZ-A2597-A2598
X
>1FG0-A478-A479
X
>2J02-A61-A62
X
>3L3C-Q87-Q88
X
>1YJW-02160-02161
X
>3CCM-02160-02161
X
>1VQO-0563-0564
X
>3OXD-B71-B72
X
>1VQ8-0563-0564
X
>2J02-A157-A158
X
</seq>
<hsp>
0 1:0.24448110899
0 2:0.344963439378
0 3:0.462140468124
0 4:0.383238884956
0 5:0.402446011672
0 6:0.621859113111
0 7:0.546132709127
0 8:0.69109675046
0 9:1.0
1 2:0.289165494979
1 3:0.379173420026
1 4:0.29670720546
1 5:0.259469382925
1 6:0.422745090354
1 7:0.330743935966
1 8:0.487218284144
1 9:0.798510972092
2 3:0.450904751888
2 4:0.265568794607
2 5:0.248177111469
2 6:0.48460556718
2 7:0.36452132968
2 8:0.537320086842
2 9:0.757057267917
3 4:0.401128077943
3 5:0.363855679732
3 6:0.365608675133
3 7:0.517384987966
3 8:0.427529415768
3 9:0.751670523139
4 5:0.125026438918
4 6:0.404810255301
4 7:0.336440961852
4 8:0.450036098503
4 9:0.703514878244
5 6:0.309527528499
5 7:0.266041067482
5 8:0.361998834287
5 9:0.631460284512
6 7:0.311974236944
6 8:0.0810901801739
6 9:0.441379602943
7 8:0.330776422349
7 9:0.529031490404
8 9:0.372239613656
</hsp>