ClaRNA

Doublet Group distance statistics: 50088

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Distances from reference structure (by RMSD)

2, 7, 2, 1, 1, 1, 5, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C6 A 0, 0.006, 0.010, 0.014, 0.016 max_d=0.016 avg_d=0.010 std_dev=0.004
C2 A 0, 0.007, 0.013, 0.019, 0.023 max_d=0.023 avg_d=0.013 std_dev=0.006
N3 A 0, 0.009, 0.016, 0.022, 0.027 max_d=0.027 avg_d=0.016 std_dev=0.007
C1' A 0, 0.009, 0.016, 0.024, 0.031 max_d=0.031 avg_d=0.016 std_dev=0.007
C5 A 0, 0.011, 0.019, 0.026, 0.029 max_d=0.029 avg_d=0.019 std_dev=0.008
N1 A 0, 0.005, 0.013, 0.020, 0.029 max_d=0.029 avg_d=0.013 std_dev=0.008
C4 A 0, 0.012, 0.023, 0.033, 0.035 max_d=0.035 avg_d=0.023 std_dev=0.010
N9 A 0, 0.015, 0.031, 0.047, 0.049 max_d=0.049 avg_d=0.031 std_dev=0.016
N6 A 0, 0.023, 0.040, 0.058, 0.068 max_d=0.068 avg_d=0.040 std_dev=0.017
N7 A 0, 0.021, 0.040, 0.059, 0.074 max_d=0.074 avg_d=0.040 std_dev=0.019
C8 A 0, 0.026, 0.050, 0.074, 0.089 max_d=0.089 avg_d=0.050 std_dev=0.024
O2' B 0, 0.081, 0.227, 0.372, 0.546 max_d=0.546 avg_d=0.227 std_dev=0.145
C2' B 0, 0.082, 0.436, 0.789, 1.132 max_d=1.132 avg_d=0.436 std_dev=0.354
C3' B 0, 0.040, 0.544, 1.047, 1.601 max_d=1.601 avg_d=0.544 std_dev=0.503
C2' A 0, -0.038, 0.619, 1.275, 1.695 max_d=1.695 avg_d=0.619 std_dev=0.657
O4' A 0, -0.117, 0.614, 1.345, 1.842 max_d=1.842 avg_d=0.614 std_dev=0.731
O2' A 0, -0.010, 0.724, 1.458, 1.868 max_d=1.868 avg_d=0.724 std_dev=0.734
C4' A 0, -0.134, 0.901, 1.936, 2.573 max_d=2.573 avg_d=0.901 std_dev=1.035
C3' A 0, -0.073, 0.985, 2.043, 2.729 max_d=2.729 avg_d=0.985 std_dev=1.058
C4' B 0, -0.126, 1.168, 2.462, 3.688 max_d=3.688 avg_d=1.168 std_dev=1.294
O5' A 0, -0.170, 1.176, 2.522, 3.549 max_d=3.549 avg_d=1.176 std_dev=1.346
P A 0, -0.173, 1.194, 2.561, 3.496 max_d=3.496 avg_d=1.194 std_dev=1.367
C1' B 0, -0.171, 1.235, 2.641, 3.219 max_d=3.219 avg_d=1.235 std_dev=1.406
O5' B 0, -0.081, 1.437, 2.956, 4.110 max_d=4.110 avg_d=1.437 std_dev=1.519
O3' A 0, 0.011, 1.535, 3.059, 4.015 max_d=4.015 avg_d=1.535 std_dev=1.524
C5' B 0, -0.148, 1.419, 2.987, 4.522 max_d=4.522 avg_d=1.419 std_dev=1.568
O3' B 0, -0.234, 1.483, 3.200, 4.162 max_d=4.162 avg_d=1.483 std_dev=1.717
C5' A 0, -0.312, 1.417, 3.145, 4.253 max_d=4.253 avg_d=1.417 std_dev=1.729
O4' B 0, -0.245, 1.537, 3.318, 4.447 max_d=4.447 avg_d=1.537 std_dev=1.781
OP2 A 0, -0.268, 1.520, 3.308, 4.496 max_d=4.496 avg_d=1.520 std_dev=1.788
OP1 B 0, -0.173, 1.888, 3.948, 6.409 max_d=6.409 avg_d=1.888 std_dev=2.060
OP1 A 0, -0.315, 1.954, 4.223, 5.610 max_d=5.610 avg_d=1.954 std_dev=2.269
P B 0, -0.261, 2.061, 4.382, 6.489 max_d=6.489 avg_d=2.061 std_dev=2.321
N1 B 0, -0.396, 1.943, 4.282, 5.250 max_d=5.250 avg_d=1.943 std_dev=2.339
O2 B 0, -0.551, 2.244, 5.039, 6.703 max_d=6.703 avg_d=2.244 std_dev=2.795
C2 B 0, -0.543, 2.354, 5.250, 6.748 max_d=6.748 avg_d=2.354 std_dev=2.897
OP2 B 0, -0.420, 2.569, 5.558, 8.703 max_d=8.703 avg_d=2.569 std_dev=2.989
C6 B 0, -0.565, 2.544, 5.653, 7.189 max_d=7.189 avg_d=2.544 std_dev=3.109
N3 B 0, -0.780, 3.148, 7.075, 8.994 max_d=8.994 avg_d=3.148 std_dev=3.927
C5 B 0, -0.781, 3.270, 7.322, 9.108 max_d=9.108 avg_d=3.270 std_dev=4.051
C4 B 0, -0.869, 3.516, 7.900, 9.726 max_d=9.726 avg_d=3.516 std_dev=4.385
N4 B 0, -1.110, 4.334, 9.778, 12.029 max_d=12.029 avg_d=4.334 std_dev=5.444

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.00 0.01 0.01 0.01 0.00 0.08 0.01 0.01 0.01 0.02 0.01 0.01 0.00 0.02 0.15 0.00 0.18 0.36 0.23 0.15
C2 0.02 0.00 0.48 0.32 0.00 0.15 0.01 0.39 0.01 0.01 0.00 0.00 0.01 0.01 0.00 0.50 0.48 0.36 0.59 1.15 0.48 0.55
C2' 0.00 0.48 0.00 0.01 0.26 0.03 0.14 0.10 0.24 0.20 0.39 0.47 0.18 0.09 0.03 0.00 0.06 0.01 0.35 0.64 0.42 0.41
C3' 0.01 0.32 0.01 0.00 0.19 0.00 0.16 0.03 0.21 0.19 0.28 0.30 0.19 0.16 0.09 0.02 0.01 0.02 0.27 0.50 0.32 0.41
C4 0.01 0.00 0.26 0.19 0.00 0.08 0.00 0.29 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.23 0.25 0.19 0.49 1.09 0.34 0.47
C4' 0.01 0.15 0.03 0.00 0.08 0.00 0.07 0.00 0.09 0.10 0.13 0.13 0.09 0.08 0.04 0.15 0.03 0.00 0.01 0.29 0.09 0.11
C5 0.00 0.01 0.14 0.16 0.00 0.07 0.00 0.29 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.16 0.16 0.10 0.52 1.43 0.38 0.60
C5' 0.08 0.39 0.10 0.03 0.29 0.00 0.29 0.00 0.35 0.17 0.40 0.34 0.35 0.22 0.18 0.08 0.12 0.03 0.01 0.41 0.26 0.03
C6 0.01 0.01 0.24 0.21 0.00 0.09 0.00 0.35 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.24 0.26 0.18 0.59 1.55 0.46 0.69
C8 0.01 0.01 0.20 0.19 0.01 0.10 0.01 0.17 0.01 0.00 0.01 0.01 0.02 0.00 0.00 0.27 0.18 0.19 0.32 1.22 0.33 0.43
N1 0.01 0.00 0.39 0.28 0.00 0.13 0.01 0.40 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.39 0.40 0.29 0.62 1.41 0.52 0.66
N3 0.02 0.00 0.47 0.30 0.00 0.13 0.01 0.34 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.48 0.44 0.35 0.52 0.95 0.39 0.44
N6 0.01 0.01 0.18 0.19 0.01 0.09 0.01 0.35 0.00 0.02 0.01 0.01 0.00 0.02 0.01 0.20 0.22 0.13 0.59 1.75 0.48 0.77
N7 0.01 0.01 0.09 0.16 0.01 0.08 0.00 0.22 0.01 0.00 0.01 0.01 0.02 0.00 0.00 0.21 0.11 0.09 0.43 1.55 0.34 0.60
N9 0.00 0.00 0.03 0.09 0.00 0.04 0.00 0.18 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.09 0.08 0.01 0.35 0.88 0.27 0.33
O2' 0.02 0.50 0.00 0.02 0.23 0.15 0.16 0.08 0.24 0.27 0.39 0.48 0.20 0.21 0.09 0.00 0.10 0.09 0.21 0.43 0.39 0.27
O3' 0.15 0.48 0.06 0.01 0.25 0.03 0.16 0.12 0.26 0.18 0.40 0.44 0.22 0.11 0.08 0.10 0.00 0.11 0.20 0.33 0.38 0.40
O4' 0.00 0.36 0.01 0.02 0.19 0.00 0.10 0.03 0.18 0.19 0.29 0.35 0.13 0.09 0.01 0.09 0.11 0.00 0.10 0.21 0.31 0.36
O5' 0.18 0.59 0.35 0.27 0.49 0.01 0.52 0.01 0.59 0.32 0.62 0.52 0.59 0.43 0.35 0.21 0.20 0.10 0.00 0.01 0.01 0.01
OP1 0.36 1.15 0.64 0.50 1.09 0.29 1.43 0.41 1.55 1.22 1.41 0.95 1.75 1.55 0.88 0.43 0.33 0.21 0.01 0.00 0.01 0.00
OP2 0.23 0.48 0.42 0.32 0.34 0.09 0.38 0.26 0.46 0.33 0.52 0.39 0.48 0.34 0.27 0.39 0.38 0.31 0.01 0.01 0.00 0.00
P 0.15 0.55 0.41 0.41 0.47 0.11 0.60 0.03 0.69 0.43 0.66 0.44 0.77 0.60 0.33 0.27 0.40 0.36 0.01 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.85 2.07 0.30 0.34 3.39 0.40 3.23 0.55 2.47 1.84 2.86 3.97 1.49 0.09 1.16 0.46 0.93 1.03 1.38 1.00
C2 0.68 1.00 0.11 0.19 2.16 0.24 2.44 0.37 2.05 1.27 1.52 2.49 0.46 0.13 0.52 0.61 0.55 0.59 0.88 0.72
C2' 0.88 2.16 0.27 0.60 3.62 0.57 3.45 0.81 2.60 1.92 3.01 4.29 1.55 0.20 1.52 0.50 1.16 1.27 1.59 1.20
C3' 0.92 2.50 0.26 0.54 4.04 0.58 3.65 0.70 2.67 2.07 3.48 4.86 1.94 0.27 1.57 0.46 0.90 1.00 1.31 0.90
C4 0.78 1.49 0.19 0.25 2.66 0.26 2.77 0.40 2.26 1.57 2.08 3.01 0.82 0.10 0.83 0.52 0.70 0.71 1.04 0.76
C4' 0.88 2.51 0.37 0.31 3.94 0.50 3.49 0.54 2.55 2.02 3.48 4.75 2.00 0.17 1.24 0.42 0.78 0.94 1.25 0.85
C5 0.73 1.25 0.17 0.21 2.18 0.24 2.33 0.35 1.99 1.39 1.70 2.38 0.63 0.11 0.69 0.49 0.61 0.59 0.85 0.64
C5' 0.73 2.53 0.34 0.39 3.91 0.69 3.28 0.65 2.32 1.89 3.56 4.76 2.11 0.35 1.29 0.36 0.78 0.92 1.13 0.78
C6 0.61 0.78 0.10 0.17 1.60 0.24 1.87 0.33 1.67 1.05 1.14 1.75 0.43 0.14 0.38 0.55 0.46 0.48 0.65 0.57
C8 0.79 1.97 0.31 0.33 2.87 0.42 2.71 0.52 2.15 1.71 2.56 3.18 1.51 0.10 1.13 0.37 0.87 0.91 1.17 0.86
N1 0.60 0.76 0.11 0.18 1.68 0.27 1.99 0.36 1.75 1.03 1.17 1.89 0.58 0.14 0.35 0.60 0.46 0.53 0.70 0.66
N3 0.76 1.34 0.16 0.23 2.62 0.24 2.80 0.39 2.28 1.50 1.96 3.03 0.63 0.11 0.73 0.58 0.66 0.68 1.04 0.78
N6 0.47 0.53 0.14 0.17 0.92 0.29 1.18 0.33 1.14 0.66 0.69 0.98 0.76 0.17 0.21 0.52 0.34 0.44 0.42 0.51
N7 0.74 1.56 0.25 0.27 2.28 0.33 2.27 0.41 1.91 1.50 1.98 2.45 1.09 0.10 0.91 0.37 0.72 0.70 0.92 0.67
N9 0.82 1.88 0.27 0.31 3.05 0.36 2.99 0.49 2.35 1.74 2.56 3.47 1.30 0.10 1.06 0.45 0.84 0.89 1.22 0.88
O2' 0.97 2.13 0.46 0.72 3.62 0.71 3.51 1.03 2.67 1.95 2.97 4.31 1.49 0.28 1.53 0.71 1.46 1.61 1.96 1.57
O3' 0.95 2.58 0.24 0.64 4.23 0.63 3.80 0.80 2.75 2.13 3.61 5.17 2.00 0.27 1.72 0.48 0.97 1.01 1.32 0.91
O4' 0.91 2.35 0.47 0.13 3.65 0.30 3.31 0.34 2.50 1.97 3.21 4.30 1.84 0.09 0.94 0.48 0.71 0.88 1.25 0.86
O5' 0.43 2.24 0.15 0.53 3.37 0.90 2.72 0.85 1.85 1.53 3.19 4.10 1.95 0.55 1.40 0.25 0.97 1.06 1.08 0.88
OP1 1.42 0.79 1.54 2.20 1.60 2.73 0.82 2.68 0.30 0.41 1.62 2.39 0.89 2.05 3.02 1.98 2.64 2.53 2.23 2.40
OP2 0.45 2.25 0.53 0.25 2.95 0.78 2.22 0.79 1.50 1.40 3.04 3.54 2.23 0.50 0.80 0.24 0.98 1.25 1.13 1.01
P 0.32 1.77 0.33 0.92 2.64 1.49 1.90 1.49 1.10 0.93 2.63 3.33 1.69 0.87 1.72 0.80 1.51 1.53 1.37 1.37

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.02 0.01 0.04 0.01 0.07 0.01 0.00 0.01 0.01 0.01 0.02 0.15 0.01 0.33 0.41 0.54 0.22
C2 0.01 0.00 0.18 0.18 0.00 0.28 0.01 0.53 0.01 0.01 0.00 0.01 0.00 0.18 0.09 0.24 0.39 0.84 0.32 0.19
C2' 0.00 0.18 0.00 0.01 0.04 0.03 0.16 0.13 0.20 0.02 0.12 0.05 0.37 0.00 0.05 0.02 0.41 0.48 0.38 0.23
C3' 0.02 0.18 0.01 0.00 0.35 0.00 0.59 0.01 0.60 0.23 0.16 0.37 0.55 0.04 0.02 0.02 0.35 0.48 0.23 0.18
C4 0.01 0.00 0.04 0.35 0.00 0.15 0.00 0.38 0.01 0.01 0.00 0.00 0.01 0.31 0.33 0.03 1.02 1.85 0.90 0.99
C4' 0.04 0.28 0.03 0.00 0.15 0.00 0.39 0.01 0.44 0.09 0.20 0.17 0.59 0.30 0.03 0.01 0.02 0.21 0.31 0.21
C5 0.01 0.01 0.16 0.59 0.00 0.39 0.00 0.68 0.00 0.00 0.01 0.01 0.01 0.33 0.53 0.18 1.45 2.24 1.41 1.45
C5' 0.07 0.53 0.13 0.01 0.38 0.01 0.68 0.00 0.71 0.23 0.47 0.42 0.97 0.20 0.18 0.02 0.01 0.15 0.22 0.01
C6 0.01 0.01 0.20 0.60 0.01 0.44 0.00 0.71 0.00 0.00 0.01 0.01 0.01 0.27 0.49 0.26 1.39 1.84 1.34 1.27
N1 0.00 0.01 0.02 0.23 0.01 0.09 0.00 0.23 0.00 0.00 0.00 0.01 0.01 0.17 0.17 0.02 0.70 1.04 0.70 0.54
N3 0.01 0.00 0.12 0.16 0.00 0.20 0.01 0.47 0.01 0.00 0.00 0.01 0.01 0.25 0.08 0.19 0.59 1.25 0.42 0.46
N4 0.01 0.01 0.05 0.37 0.00 0.17 0.01 0.42 0.01 0.01 0.01 0.00 0.01 0.34 0.37 0.04 1.09 2.07 0.94 1.11
O2 0.01 0.00 0.37 0.55 0.01 0.59 0.01 0.97 0.01 0.01 0.01 0.01 0.00 0.15 0.42 0.42 0.50 0.44 0.44 0.40
O2' 0.02 0.18 0.00 0.04 0.31 0.30 0.33 0.20 0.27 0.17 0.25 0.34 0.15 0.00 0.05 0.22 0.37 0.38 0.47 0.22
O3' 0.15 0.09 0.05 0.02 0.33 0.03 0.53 0.18 0.49 0.17 0.08 0.37 0.42 0.05 0.00 0.11 0.23 0.42 0.17 0.18
O4' 0.01 0.24 0.02 0.02 0.03 0.01 0.18 0.02 0.26 0.02 0.19 0.04 0.42 0.22 0.11 0.00 0.22 0.21 0.58 0.23
O5' 0.33 0.39 0.41 0.35 1.02 0.02 1.45 0.01 1.39 0.70 0.59 1.09 0.50 0.37 0.23 0.22 0.00 0.04 0.01 0.00
OP1 0.41 0.84 0.48 0.48 1.85 0.21 2.24 0.15 1.84 1.04 1.25 2.07 0.44 0.38 0.42 0.21 0.04 0.00 0.01 0.01
OP2 0.54 0.32 0.38 0.23 0.90 0.31 1.41 0.22 1.34 0.70 0.42 0.94 0.44 0.47 0.17 0.58 0.01 0.01 0.00 0.01
P 0.22 0.19 0.23 0.18 0.99 0.21 1.45 0.01 1.27 0.54 0.46 1.11 0.40 0.22 0.18 0.23 0.00 0.01 0.01 0.00