sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3AM1-B10-B54
X
>3U5D-11502-17
X
>3U5H-51508-57
X
>1YJW-0830-0825
X
>2OTJ-0830-0825
X
>3CCM-0830-0825
X
>3G71-0830-0825
X
>1YJN-0830-0825
X
>3CCS-0830-0825
X
>3CCL-0830-0825
X
>3CCR-0830-0825
X
>1FFK-0829-0824
X
</seq>
<hsp>
0 1:0.930035082055
0 2:0.99999989837
0 3:0.902771759429
0 4:0.896733593975
0 5:0.895951732988
0 6:0.911041122317
0 7:0.894567058525
0 8:0.913984696766
0 9:0.912713671283
0 10:0.941876137543
0 11:0.893622430027
1 2:0.10074708902
1 3:0.202209912154
1 4:0.185789898707
1 5:0.196947787715
1 6:0.20010070532
1 7:0.197191940876
1 8:0.19364196062
1 9:0.196361532565
1 10:0.208846026862
1 11:0.199337215141
2 3:0.201093957501
2 4:0.188282457222
2 5:0.195948894397
2 6:0.193054053116
2 7:0.202574124541
2 8:0.189670224338
2 9:0.193321249973
2 10:0.191010302498
2 11:0.205222252062
3 4:0.0319348449257
3 5:0.0370075646452
3 6:0.0413252557299
3 7:0.0335531118852
3 8:0.0553758125595
3 9:0.0516657415859
3 10:0.101469474632
3 11:0.0356266430294
4 5:0.0208043611632
4 6:0.02901853242
4 7:0.0288990623779
4 8:0.0417146120908
4 9:0.0414333490776
4 10:0.0853443400054
4 11:0.0317140169049
5 6:0.0250865942431
5 7:0.0262859114574
5 8:0.0384745166643
5 9:0.0390178207386
5 10:0.0852784781367
5 11:0.0331122896333
6 7:0.0319116360018
6 8:0.0238856742548
6 9:0.0236200375296
6 10:0.0637878610942
6 11:0.033815092975
7 8:0.0350751814348
7 9:0.0313236447056
7 10:0.0889842083962
7 11:0.0132211326344
8 9:0.0100948724666
8 10:0.058459639594
8 11:0.0373182718065
9 10:0.061774514232
9 11:0.0315536500552
10 11:0.0874659182823
</hsp>