sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X201-X353
X
>3F1F-A209-A441
X
>3F1H-A209-A441
X
>3R8N-A1360-A1357
X
>1VQ9-0120-0118
X
>3CMA-0120-0118
X
>1VQM-0120-0118
X
>3CXC-0120-0118
X
>1VQ4-01311-0438
X
>1Q81-A1311-A438
X
</seq>
<hsp>
0 1:0.103707160774
0 2:0.102307390324
0 3:0.362733629606
0 4:0.965562356348
0 5:0.946393125561
0 6:0.943190064445
0 7:0.94942122805
0 8:0.904946212675
0 9:0.895192352891
1 2:0.0116699188799
1 3:0.373983471935
1 4:0.996065797098
1 5:0.976833625886
1 6:0.972441036865
1 7:0.977296338219
1 8:0.91919361701
1 9:0.907823011521
2 3:0.371192723449
2 4:1.0
2 5:0.981192413662
2 6:0.976561654714
2 7:0.981499305193
2 8:0.924284072129
2 9:0.91304434244
3 4:0.872486281992
3 5:0.877445863567
3 6:0.851912675385
3 7:0.862861891709
3 8:0.936667443528
3 9:0.937064817073
4 5:0.0726381679987
4 6:0.0342149651287
4 7:0.049685230044
4 8:0.399641685579
4 9:0.427691993685
5 6:0.0637145727025
5 7:0.0624670400564
5 8:0.344111439068
5 9:0.375063228504
6 7:0.0441583159127
6 8:0.385840049781
6 9:0.413369791114
7 8:0.368184120171
7 9:0.397720153056
8 9:0.0686598248901
</hsp>