sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2203-A1413
X
>3KNK-A359-A357
X
>3F1E-A772-A770
X
>3R8O-A792-A790
X
>3F1G-A772-A770
X
>2VQF-A772-A770
X
>2VQE-A772-A770
X
>2UUA-A772-A770
X
>2UUB-A772-A770
X
>1N32-A772-A770
X
</seq>
<hsp>
0 1:0.999999474877
0 2:0.457483151774
0 3:0.472383087939
0 4:0.459265237508
0 5:0.462831540115
0 6:0.435399305014
0 7:0.425232584898
0 8:0.434612939041
0 9:0.446586234927
1 2:0.757808957122
1 3:0.815084010619
1 4:0.764848957725
1 5:0.744935966118
1 6:0.796993065469
1 7:0.793142661611
1 8:0.758621423104
1 9:0.766815889858
2 3:0.104302653336
2 4:0.0123309988842
2 5:0.0577990271642
2 6:0.0729975710889
2 7:0.0832768615928
2 8:0.0508253899314
2 9:0.0460215211067
3 4:0.103401273973
3 5:0.122459536194
3 6:0.111066360083
3 7:0.0770900629398
3 8:0.105554627613
3 9:0.0852235134632
4 5:0.0599075275191
4 6:0.0682742033896
4 7:0.0838670680197
4 8:0.0562133640052
4 9:0.046899415455
5 6:0.0567406748146
5 7:0.082138363295
5 8:0.0485311123691
5 9:0.0562709087639
6 7:0.0682626070847
6 8:0.0651741133827
6 9:0.0619393308302
7 8:0.0535242275655
7 9:0.0443686069018
8 9:0.0336556845084
</hsp>