sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3FU2-C22-C2
X
>2J03-A359-A357
X
>2J01-A359-A357
X
>3CCJ-0909-02126
X
>3FU2-B23-B2
X
>1N32-A440-A363
X
>1XMQ-A440-A363
X
>1FJG-A440-A363
X
</seq>
<hsp>
0 1:0.514620501448
0 2:0.516677351598
0 3:0.470036179016
0 4:0.0198336958436
0 5:0.584281163978
0 6:0.599988775595
0 7:0.567210980899
1 2:0.00367586035302
1 3:0.849425493398
1 4:0.509040366472
1 5:0.978708972917
1 6:0.999385836415
1 7:0.96831022437
2 3:0.851623659487
2 4:0.511030152843
2 5:0.979180523533
2 6:0.999999237859
2 7:0.968769475023
3 4:0.482065143862
3 5:0.368184560821
3 6:0.370270146748
3 7:0.362610921323
4 5:0.59135031267
4 6:0.607377646195
4 7:0.573629934595
5 6:0.0404996219122
5 7:0.0359089134372
6 7:0.0584163700155
</hsp>