sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OH5-A2141-A2137
X
>2J01-A1572-A1623
X
>3OHY-A1156-A1154
X
>3CCJ-01589-01587
X
>1YJN-0472-0470
X
>3OHD-A1156-A1154
X
>3OI1-A1734-A1732
X
>1KD1-A472-A470
X
>3CCJ-0472-0470
X
>3CME-0472-0470
X
>2OTL-0681-0679
X
</seq>
<hsp>
0 1:0.43611576077
0 2:0.889551284036
0 3:0.820431765244
0 4:0.993049676065
0 5:0.962410169355
0 6:0.868598086631
0 7:0.975714419986
0 8:0.999999349564
0 9:0.993218874536
0 10:0.901383661029
1 2:0.617002837675
1 3:0.541436172242
1 4:0.731451496659
1 5:0.699694118734
1 6:0.600645580457
1 7:0.715848800985
1 8:0.739587103876
1 9:0.732695593351
1 10:0.635485193977
2 3:0.0991957516498
2 4:0.159553063138
2 5:0.10542676096
2 6:0.0773027875765
2 7:0.151480876339
2 8:0.172734048923
2 9:0.167217156943
2 10:0.0724294482666
3 4:0.209017517575
3 5:0.199933130533
3 6:0.091462172788
3 7:0.194194822849
3 8:0.228912940024
3 9:0.211870158574
3 10:0.115808896229
4 5:0.153640732187
4 6:0.156900060077
4 7:0.0286369323083
4 8:0.0526493955337
4 9:0.0262800716658
4 10:0.125045604102
5 6:0.140357565713
5 7:0.157578175633
5 8:0.148549124649
5 9:0.164444559142
5 10:0.113070598524
6 7:0.144578898475
6 8:0.164462462902
6 9:0.160574016655
6 10:0.0402693414434
7 8:0.0709693470608
7 9:0.0249406454935
7 10:0.114743447434
8 9:0.0710647490777
8 10:0.134482811482
9 10:0.129499248791
</hsp>