sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHC-A233-A271
X
>3OHD-A233-A271
X
>3OH5-A2241-A2235
X
>3OHJ-A874-A872
X
>3OHK-A2241-A2235
X
>3OHK-A874-A872
X
>1XMQ-A233-A271
X
>3FU2-C13-C10
X
>3OHZ-A2241-A2235
X
>2J00-A233-A271
X
</seq>
<hsp>
0 1:0.00965222692252
0 2:0.310530975445
0 3:0.992898439536
0 4:0.311331656392
0 5:0.993700061329
0 6:0.0885289507398
0 7:0.988149778658
0 8:0.309913130701
0 9:0.0664292369058
1 2:0.304693227451
1 3:0.990584648704
1 4:0.305671713345
1 5:0.991352256558
1 6:0.0895374312832
1 7:0.985973515024
1 8:0.304079335322
1 9:0.0679746493265
2 3:0.876642013824
2 4:0.0241306528658
2 5:0.878194933228
2 6:0.294558244449
2 7:0.8716040756
2 8:0.048450986837
2 9:0.317317370315
3 4:0.875740092939
3 5:0.0106322025858
3 6:0.988561795516
3 7:0.0596286965561
3 8:0.857551650585
3 9:0.998971597155
4 5:0.877424422987
4 6:0.292794890493
4 7:0.871183538073
4 8:0.0434676770153
4 9:0.316480780401
5 6:0.989798038973
5 7:0.0581786233279
5 8:0.85913140609
5 9:0.999999067866
6 7:0.984002922042
6 8:0.29896826432
6 9:0.0591123689673
7 8:0.853107258891
7 9:0.993963852985
8 9:0.320340985079
</hsp>