sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1MZP-B12-B10
X
>2QBZ-X90-X85
X
>3RW6-F11-F46
X
>3PDR-X90-X85
X
>3OHC-A673-A669
X
>3OHD-A673-A669
X
>3CCQ-01148-01118
X
>1FJG-A978-A997
X
>1L3D-A20-A15
X
>3OH7-A2544-A1602
X
</seq>
<hsp>
0 1:0.474151520738
0 2:0.198413608077
0 3:0.461074673042
0 4:0.525757485202
0 5:0.525643700687
0 6:0.624286104903
0 7:0.922204904119
0 8:0.964268009581
0 9:0.999399992469
1 2:0.341002891427
1 3:0.0323154693263
1 4:0.064762176258
1 5:0.0635738848502
1 6:0.207672966113
1 7:0.478481379253
1 8:0.524864580616
1 9:0.8442057742
2 3:0.324134861962
2 4:0.388295575244
2 5:0.388548519304
2 6:0.469663103836
2 7:0.785697860432
2 8:0.837406940357
2 9:1.0
3 4:0.0763400183268
3 5:0.07533617396
3 6:0.203845308588
3 7:0.496424179397
3 8:0.547134922506
3 9:0.8528263276
4 5:0.00447015628272
4 6:0.175752051737
4 7:0.434539302832
4 8:0.481522083265
4 9:0.827355525001
5 6:0.176333106613
5 7:0.435406343234
5 8:0.482343356366
5 9:0.828269831763
6 7:0.368989415812
6 8:0.462298023026
6 9:0.738385668146
7 8:0.142638952799
7 9:0.588225207791
8 9:0.632435309925
</hsp>