sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A1082-A1081
X
>3F1F-A1082-A1081
X
>3KNI-A2075-A2074
X
>3KNH-A597-A596
X
>2J00-A367-A366
X
>2J02-A367-A366
X
>3KNK-A2068-A2067
X
>1FG0-A91-A90
X
>3KNK-A1671-A1670
X
>1N32-A1111-A1110
X
>1M5V-E73-E72
X
>1XMQ-A1342-A1341
X
</seq>
<hsp>
0 1:0.00775169466977
0 2:0.698477480363
0 3:0.616261660494
0 4:0.334705834733
0 5:0.337174600878
0 6:0.444788093484
0 7:0.281312536815
0 8:0.484110415855
0 9:0.208351387346
0 10:0.116081193347
0 11:0.466979312437
1 2:0.702103274483
1 3:0.618078659931
1 4:0.334820631839
1 5:0.337369155714
1 6:0.445606688935
1 7:0.281264863379
1 8:0.485409399874
1 9:0.208720289549
1 10:0.118391720536
1 11:0.466504454931
2 3:0.370127169608
2 4:0.522089111208
2 5:0.513286016246
2 6:0.482905008577
2 7:0.532247939043
2 8:0.361047964385
2 9:0.674536619873
2 10:0.695441119826
2 11:0.999999924724
3 4:0.446045817288
3 5:0.434765944604
3 6:0.209828479232
3 7:0.457156230111
3 8:0.322300070942
3 9:0.635733218973
3 10:0.608764834929
3 11:0.981143075202
4 5:0.0167371871699
4 6:0.323501941881
4 7:0.0957154024698
4 8:0.20453134083
4 9:0.26525654344
4 10:0.359523306587
4 11:0.646756428956
5 6:0.31359456572
5 7:0.08892630442
5 8:0.196818271513
5 9:0.270644599644
5 10:0.359982888663
5 11:0.651703294918
6 7:0.320042985005
6 8:0.293889055089
6 9:0.475651082003
6 10:0.43299311928
6 11:0.811187401596
7 8:0.249248260823
7 9:0.236052399154
7 10:0.306832893385
7 11:0.611126718703
8 9:0.430593560778
8 10:0.494382752837
8 11:0.79990039324
9 10:0.198258697102
9 11:0.386874184914
10 11:0.417629960163
</hsp>