sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2VQE-A279-A103
X
>2VQF-A279-A103
X
>3R8N-A287-A113
X
>1FJG-A279-A103
X
>3HHN-E87-E120
X
>2UUB-A279-A103
X
>2UXC-A279-A103
X
>1FJG-A1027-A1025
X
>2VQE-A1027-A1025
X
>1N32-A1027-A1025
X
>2UUA-A1027-A1025
X
>2UUB-A1027-A1025
X
</seq>
<hsp>
0 1:0.152190145864
0 2:0.552924949731
0 3:0.326517050963
0 4:0.372829905165
0 5:0.277441014491
0 6:0.349055981685
0 7:0.654545574822
0 8:0.579418231233
0 9:0.740371123656
0 10:0.936409084441
0 11:0.818939952015
1 2:0.520651146817
1 3:0.217351630021
1 4:0.455619116711
1 5:0.168292178386
1 6:0.237383888299
1 7:0.557342607929
1 8:0.507155185975
1 9:0.662472847835
1 10:0.89633445678
1 11:0.768545910453
2 3:0.422974627017
2 4:0.820305044277
2 5:0.427785078422
2 6:0.470128882996
2 7:0.632046140882
2 8:0.576725523362
2 9:0.704393685427
2 10:0.8026782757
2 11:0.78138870367
3 4:0.598517330703
3 5:0.120331881869
3 6:0.181684924998
3 7:0.533175896123
3 8:0.525623978516
3 9:0.660113576524
3 10:0.882619927736
3 11:0.763324630818
4 5:0.529946459504
4 6:0.538665147775
4 7:0.862866426348
4 8:0.741635128737
4 9:0.840205572715
4 10:1.0
4 11:0.837314693737
5 6:0.141539698564
5 7:0.525223048396
5 8:0.465238139876
5 9:0.605020729
5 10:0.828849477535
5 11:0.696905205705
6 7:0.463239640988
6 8:0.423480106975
6 9:0.526225438762
6 10:0.766720278289
6 11:0.624218149906
7 8:0.277167030717
7 9:0.347191055665
7 10:0.585447778723
7 11:0.542064166567
8 9:0.209805477255
8 10:0.447022529931
8 11:0.369157598215
9 10:0.35492280384
9 11:0.250369844441
10 11:0.254397503982
</hsp>