sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A1048-A1046
X
>3F1F-A1078-A1077
X
>3F1H-A1078-A1077
X
>3R8N-A1048-A1046
X
>3KNH-A1056-A1055
X
>2CKY-B70-B69
X
>3KNK-A423-A422
X
>1G59-D1-D0
X
>1G59-B1-B0
X
</seq>
<hsp>
0 1:0.548395991584
0 2:0.547965233882
0 3:0.239017892234
0 4:0.29481054537
0 5:0.63766639044
0 6:0.397614252006
0 7:0.293109215981
0 8:0.323599534343
1 2:0.00298227444953
1 3:0.572537267944
1 4:0.460915066373
1 5:0.999994948685
1 6:0.181530802227
1 7:0.314428234452
1 8:0.320936073021
2 3:0.571124530828
2 4:0.459501681944
2 5:0.998773694975
2 6:0.18087310382
2 7:0.313834814165
2 8:0.319947219929
3 4:0.264655813851
3 5:0.573385643353
3 6:0.420781417932
3 7:0.347543413632
3 8:0.345192174006
4 5:0.599565968468
4 6:0.369498676217
4 7:0.237421836411
4 8:0.208459605277
5 6:0.904538626128
5 7:0.772587898701
5 8:0.77470048617
6 7:0.203256724665
6 8:0.223245620864
7 8:0.0802343696056
</hsp>