sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-51128-51127
X
>3U5D-11122-11121
X
>3SKL-B11-B10
X
>3SKZ-A12-A11
X
>3SLM-A12-A11
X
>3SKZ-B12-B11
X
>3SLM-B12-B11
X
>3SKI-A12-A11
X
>3SKI-B12-B11
X
</seq>
<hsp>
0 1:0.0509287289557
0 2:0.981850299045
0 3:0.985050114138
0 4:0.977803185107
0 5:0.96457262063
0 6:0.992880342656
0 7:1.0
0 8:0.991788574478
1 2:0.976098812913
1 3:0.98166536731
1 4:0.976567124923
1 5:0.962253001606
1 6:0.987473639069
1 7:0.999162331939
1 8:0.995837690988
2 3:0.0777969944162
2 4:0.102461176656
2 5:0.0832941792041
2 6:0.100540802533
2 7:0.124659202551
2 8:0.216309155861
3 4:0.0844348347643
3 5:0.0769715352585
3 6:0.0815397540129
3 7:0.0891897987563
3 8:0.181290930137
4 5:0.0583073516513
4 6:0.133371273685
4 7:0.0641280057557
4 8:0.124352069124
5 6:0.11881126675
5 7:0.101944124256
5 8:0.163058485704
6 7:0.142239444698
6 8:0.234920235245
7 8:0.110216916772
</hsp>