sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A2125-A2127
X
>3F1F-A2125-A2127
X
>3SLM-A25-A24
X
>3SKZ-B25-B24
X
>3SKZ-A25-A24
X
>3U5D-11774-11773
X
>3U5H-51780-51779
X
</seq>
<hsp>
0 1:0.0012868932959
0 2:0.96403682123
0 3:0.999999974915
0 4:0.984346051095
0 5:0.886115554526
0 6:0.886022663267
1 2:0.963491119308
1 3:0.999448002128
1 4:0.983800798312
1 5:0.885656461051
1 6:0.885568451825
2 3:0.0581952071151
2 4:0.0459317715553
2 5:0.189448252935
2 6:0.200216937896
3 4:0.0205920517297
3 5:0.194880097204
3 6:0.20606837947
4 5:0.185001774939
4 6:0.19695084382
5 6:0.0203632602492
</hsp>