sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A890-A889
X
>3SUX-X1-X0
X
>3KNI-A891-A890
X
>3F1H-A2466-A2465
X
>3F1F-A2466-A2465
X
>3GX2-A15-A14
X
>2J01-A270-A269
X
</seq>
<hsp>
0 1:0.224166052921
0 2:0.0733832123723
0 3:0.885646695382
0 4:0.887704128342
0 5:0.221679140972
0 6:0.259223153038
1 2:0.191188972063
1 3:0.856675386785
1 4:0.857819434236
1 5:0.193271736685
1 6:0.224351441271
2 3:0.852708274377
2 4:0.85479074173
2 5:0.211641823866
2 6:0.26055451746
3 4:0.00640673732802
3 5:0.93170637515
3 6:0.998745195315
4 5:0.933209319321
4 6:0.999997839188
5 6:0.0921960206442
</hsp>